Malcolm 朝精 Barrett

Malcolm 朝精 Barrett

@malcolmbarrett.malco.io

Ph.D., epidemiology. research software engineer @ Stanford Health Policy. living in Ann Arbor. open-source data science. causal inference. doing poems on aircrafts. approximately Bayesian. formerly Posit, Apple, AmeriCorps. 心を燃やせ。sic semper tyrannis.

5.3K followers839 following780 posts

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Link broke! Here is the current link: www.r-causal.org/chapters/04-...

r-causal.org4  Expressing causal questions as DAGs – Causal Inference in R
Malcolm 朝精 Barrett@malcolmbarrett.malco.io

We've made a major update to the causal diagrams chapter of Causal Inference in R! Check it out to learn about DAGs! I think there's a lot in this chapter that is undercovered in other sources. #rstats #causalinference @lucystats.bsky.social @travisgerke.bsky.social www.r-causal.org/chapters/05-...

Malcolm 朝精 Barrett reposted

Malcolm 朝精 Barrett reposted

This is Pele, my new rendering library for diagrams and charts, compatible with the latest Mermaid syntax. - 100-500× faster than mermaid.js - 6× smaller bundle - No dependencies - Easy to theme - Responsive to device width - Open source (MIT) Try it at pele.run

Malcolm 朝精 Barrett reposted

Wrote a blogpost about AI and atproto. Just a normal blogpost. Normal kind. (I actually did write the text of it.)

Malcolm 朝精 Barrett reposted

I am hiring! There are probably about ~12 people in the world who meet exactly what I'm looking for, so we're open to considering teaching a 13th person to do what I do provided they already have a strong background in Bayesian statistics (non-negotiable) docs.google.com/document/d/1...

docs.google.comData Scientist ML Job DescriptionData Scientist (ML Engineering) Company: Botsi Location: United States, Canada, or Latin America (Remote) About Botsi Botsi is building the AI layer that helps consumer apps show the right offer to th...

Malcolm 朝精 Barrett reposted

Hi all! I'm looking for people to try out my new collaborative writing platform. Think: Overleaf or GDocs for Mkdown LaTeX HTML Typst Quarto Free, open source, and full-featured. Many editors, chat, comments, track changes, history, AI, mobile, templates, etc Would ❤️ any feedback! librepaper.org

Malcolm 朝精 Barrett reposted

The October release of #Positron went out last week, and I am so pleased to share a bit of what's in it! 🙌 We've got the new Data Connections on by default, faster language features for Quarto, ways for agents to drive and interact with Positron, and more: opensource.posit.co/blog/2026-10...

opensource.posit.coPositron October Release HighlightsHighlights from the 2026.10 release of Positron, including Posit Assistant that can drive Positron itself, a built-in MCP server for your own coding agents, Data Connections on by default, faster lang...

Malcolm 朝精 Barrett reposted

Important knowledge for all those looking to submit an R package

Aki Vehtari@avehtari.bsky.social

TIL that cran is "A measure of capacity for fresh herrings as caught; fixed by the Fisheries Board at 371/2 gallons (about 750 fish)." (Oxford English Dictionary).

Malcolm 朝精 Barrett reposted

i'm working on some more updates to the official Git documentation so uh what is one concept you wish the docs explained more clearly? right now I'm working on merge conflicts which I'm pretty excited about

Malcolm 朝精 Barrett reposted

quick screencap of qmd->docx->qmd comment flow in quarto 2/quarto-hub

Carlos Scheidegger@cscheid.net

So check out this PR from @gordonwoodhull.bsky.social over at Quarto 2. Is that import/export from Word preserving comments? Why yes, yes it is indeed 😮 github.com/quarto-dev/q...

Malcolm 朝精 Barrett reposted

🚨 After 20 years of service, the R-Forge code-sharing platform will be retired. #rstats Timeline: - Until end of 2026: Normal operations. - Jan 2027: Switch to read-only, but SVN continues to work. - Jan 2028: SVN also read-only. Reason: The underlying FusionForge software is no longer maintained.

Malcolm 朝精 Barrett reposted

This thread is so great! 🤩 To avoid annoying resizing, figured I'd mention an alternative to {ggview}: {showtext} can resize all text to a specific dpi Text is the part that I find I have to fiddle with most when saving #ggplot2 plots, so this usually works for me 😀 #rstats #dataviz

Nicola Rennie@nrennie.bsky.social

If you missed today's @rinpharma.bsky.social workshop, here are a few of my favourite "quick fixes" for some common #ggplot2 issues 📊 1. Use {ggview} to preview plots at the same size and resolution as you want to save them with ggsave() to avoid the annoying resizing #RStats #DataViz

Malcolm 朝精 Barrett reposted

If you’ve seen me trying not to reveal what I’ve been working on the last few months, well, here it is 🎉 Our first big offering - aside from Atmosphere account hosting - is personal websites for researchers! Drop your must-haves, preferences, ideas, or questions about personal/prof sites below 🧪🧬💻

Aster ID@aster.id

The modern research ecosystem of online tools and communities is controlled by for-profit companies. But we think that researchers should be the priority - not the product. So, we're announcing Aster ID: not-for-profit Atmosphere account hosting for researchers.

Malcolm 朝精 Barrett reposted

Ever looked at your graph and thought: this needs a more dramatic exit strategy? Make your R base plots self-destruct with style. If you must, download here: github.com/brandmaier/d... #RStats #DataVisualization #RProgramming #DataScience #OpenSource #AcademicHumor #noAI

Malcolm 朝精 Barrett reposted

I get that AI in academia/research is a little controversial, but personally, it has greatly improved my ability to produce low-impact science.

Malcolm 朝精 Barrett reposted

God, grant me the courage to change the things I can and incredible new powers to change the things I can't.

Malcolm 朝精 Barrett reposted

Today, I’m proud to announce Homebrew 7.0.0. The most significant changes since 6.0.0 are faster installations, stronger sandboxing, native macOS app, vulnerability checks, advisory database, end of macOS 10.15 support and Intel Macs to Tier 3.

brew.sh7.0.0Today, I’m proud to announce Homebrew 7.0.0. The most significant changes since 6.0.0 are faster installations and upgrades, stronger sandboxing, a native macOS app, built-in vulnerability checks and an advisory database, the end of macOS 10.15 support and Intel Macs moving to Tier 3.

Malcolm 朝精 Barrett reposted

quarto-hub is really coming together, y'all! I'm so excited to share some of this with you at conf next week. Check out our upcoming collaborative wysiwyg editor working on a fully-styled Quarto 2 page:

Malcolm 朝精 Barrett reposted

Very few people know that this is how it all began @celestialsem.bsky.social

Emily Riederer@emilyriederer.bsky.social

For no real reason, I was looking up something about the ancestry of causal DAGs in path diagrams and came across this picture. I got to see it so you do to. HT to Sewall Wright who both set the course for a very useful analytical tool but also took the time to include cute drawings of guinea pigs