Nextflow

Nextflow Training Week by @seqera.io is back Nov 16–20! 💻Build your Nextflow skills with beginner courses or level up with advanced pipeline development & @nf-co.re best practices. Pass the end-of-week quizzes to earn a certificate from the Nextflow creators. hubs.la/Q04Cyrnq0

Nextflow reposted

Fed up with creating samplesheets?🙋 With Agents on Seqera Platform, you can automate it. When new data lands in your cloud storage, an Action automatically hands off to an agent, which builds the samplesheet for you. ⬇️ Watch the video to see how.

Online events coming up this November! Whether you’re just starting out with Nextflow or already running pipelines at scale, our November events have something for you. ⬇️

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hubs.laNextflow Training Week November 2026: Self-Paced Online Training from the Nextflow Creators | SeqeraLooking to get started with Nextflow? Join us for our final Nextflow Training Week of 2026! This self-paced online training is designed for accessibility and flexibility. Featuring on-demand walkthrou...

📆 Nov 16-20 │👩‍🎓Nextflow Training Week by @seqera.io: Self-Paced Online Training from the Nextflow Creators Build your Nextflow skills progressively through beginner-friendly courses, or level up with advanced development techniques and @nf-co.re best practices. 🔗 hubs.la/Q04Cr9lG0

hubs.laWhat’s New in Nextflow 26.10: Pipeline Composition, Global Cache, and Agentic Nextflow | SeqeraNextflow 25.10 introduced workflow params and outputs. Nextflow 26.04 brought records and static typing. Nextflow 26.10 completes the picture: the new language features come together to make pipelines...

📆 Nov 18│🆕Webinar: What’s New in Nextflow 26.10: Pipeline Composition, Global Cache, and Agentic Nextflow Join us for a walkthrough of everything new in Nextflow 26.10, including pipeline composition, Global Cache, workflow modules, and an agent primitive. 🔗 hubs.la/Q04Cr7tZ0

Online events coming up this November! Whether you’re just starting out with Nextflow or already running pipelines at scale, our November events have something for you. ⬇️

hubs.laSeqera Co-Scientist: Contextual Agent Help Across Pipelines and Interactive AnalysisSeqera is the intelligent engine for life sciences, trusted by 150+ pharma and biotech organizations worldwide. In this webinar, we'll explore how Seqera Co-Scientist turns scientific intent into acti...

📆 Nov 4 │💻 Webinar: @seqera.io Co-Scientist: Contextual Agent Help Across Pipelines and Interactive Analysis. Co-Scientist starts with full context: pipelines, runs, code, compute and data. Join us to see how that context now extends into interactive analysis. 🔗 hubs.la/Q04Cr5KH0

Nextflow reposted

Thank you to everyone who stopped by our booth at #ASHG2026! We loved hearing about your science and chatting R&D, bioinformatics, and agentic science, plus sharing the latest in @nextflow.io, Seqera Platform, and Co-Scientist. ✨

Missed the @seqera.io keynote at the #NextflowSummit ?💻 Join us on Nov 18 as we showcase everything new in Nextflow, from Global Cache to pipeline composition and AI agents in your pipelines. 🔗 Register now: hubs.la/Q04Cg0080

🎥 All the talks from the #NextflowSummit are now available to watch on-demand. Catch up on sessions from 50+ speakers, including Roche, @boehringerglobal.bsky.social, Myriad Genetics, @nasaupdates.bsky.social, Benchling, Lonza, @nf-co.re, @seqera.io, and more! ▶️ Watch now: hubs.la/Q04C2jnc0

Attending #AIDDD2026 in Boston next week? Come and learn about Nextflow Frontier: a closed-loop, recursive AI system with full in silico validation to solve the unsolvable. hubs.la/Q04BT5vK0

Seqera@seqera.io

We’re attending #AIDDD2026 in Boston, Oct 27–29!🎤 Don't miss our talk on Nextflow Frontier, the recursive, closed-loop discovery system built to tackle the unsolved problems in life sciences. Event details: hubs.la/Q04BT2S80

Nextflow reposted

Most AI tools start every conversation from scratch. Co-Scientist starts with full context: pipelines, runs, code, compute and data.✨Join us on Nov 4 to see how that context now extends into interactive analysis with Studios, the interactive analysis feature of Seqera Platform. 🔗 hubs.la/Q04BK2wN0

Nextflow reposted

2 days, 18 projects, 60+ participants.🌏 Last week in Barcelona, the @nextflow.io community gathered for the @nf-co.re hackathon plus two hands-on training workshops.📸 Check out the photos: hubs.la/Q04BHv-r0. Share your favorite moments with #NextflowSummit

hubs.laNextflow Global Cache: Compute Once, Reuse Everywhere | SeqeraToday we're announcing Nextflow Global Cache: a shared caching layer that lets tasks be reused across runs, across pipelines, and across projects.

🌐 Introducing Nextflow Global Cache: a shared caching layer that reuses tasks across runs, pipelines, and projects. If a task with the same inputs and script has already run anywhere in your workspace, Nextflow restores its outputs instead of rerunning it. hubs.la/Q04zMcbx0

→ Lower compute costs, with far fewer tasks to run → Faster results, since cached tasks finish instantly → Less storage, with identical outputs stored once → Rename, refactor, and switch pipelines without losing cached work

♻️ No pipeline code changes needed. Compute once, reuse everywhere. 📚 Read the blog: hubs.la/Q04zMcbx0

Nextflow reposted

nf-core

@nf-co.re

The meme game is strong here in Barcelona. Great progress across all the projects today. Excited to see how far we get by tomorrow. But first: time for the rooftop social!🌆🍸

The @nextflow.io training sessions are in full swing! Newcomers are learning basic operations and workflow code structure, while advanced users dive into workflows of workflows & testing with nf-test. 🚀 Great engagement everyone, keep the questions coming! #NextflowSummit

🔥 If you're here in Barcelona, make sure to grab the latest swag from @nextflow.io, @nf-co.re, and @seqera.io. 🧦👕 Socks, stickers, t-shirts, and lanyards. #NextflowSummit

Nextflow 26.10 is here! 🚀 Static typing is now stable, and a year of language work comes together to make your pipelines composable, reusable building blocks that you (or your AI agent) can verify before a single task runs.🧵 hubs.la/Q04BfpCQ0

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✨ Agents: a new skill lets agents migrate your pipelines to the latest syntax. Plus, an experimental agent primitive brings AI agents into pipelines as first-class components.

hubs.laWhat's New in Nextflow 26.10: Type Checking, Workflow Modules, Pipeline Composition, Agent Primitive | SeqeraWe're thrilled to announce the release of Nextflow 26.10. This release is the culmination of the language work we've been delivering over the past year.

📚 Read the Nextflow 26.10 blog to explore all of these product updates: hubs.la/Q04BfpCQ0

📦Workflow Modules: publish subworkflows to the Nextflow Registry and install them anywhere. Each module brings its own dependencies, so no more version clashes.

⚒️ Pipeline Composition: any typed pipeline is now a callable workflow. Chain pipelines like fetchngs → rnaseq in a single run, with downstream work starting as upstream results arrive.

✅ Type Checking: nextflow lint now catches type errors from the command line, so bugs surface in CI instead of hours into a run. Static typing is stable and ready for production.

We're just 1 hour away from @nextflow.io training and the @nf-co.re hackathon here in Barcelona! 🇪🇸 Our team is ready and excited for 2 days of learning, hacking and collaboration. Thrilled to welcome newcomers ready to push the boundaries of what's possible with Nextflow! #NextflowSummit

The Global #NextflowSummit by @seqera.io has officially come to an end! We heard inspiring talks from across the worldwide community, showcasing the latest Nextflow innovations in oncology, microbiology, genomics, infrastructure, tooling, and AI. 🧬

📹 If you missed any of the talks, they will soon be available to watch on-demand: hubs.la/Q04B5wPd0 A huge thank you to all the attendees, speakers, poster presenters, and sponsors who made this event a success. 🙏

And the excitement doesn’t stop here: the Nextflow Training and @nf-co.re Hackathon kicks off tomorrow here in Barcelona!

#NextflowSummit Track 6: Genomics at Scale.📈 Follow along for talks from @genomicsengland.bsky.social, @alloxbio.bsky.social, @seqera.io, and Color Health. 📹 Register to join: hubs.la/Q04B5wPd0

hubs.laScaling Upstream Genomics Analysis with Nextflow and Seqera Platform – Suleyman Ucuncuoglu | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

Suleyman Ucuncuoglu from the University of Iowa showed how a single LIMS link launches @nf-co.re/rnaseq on their HPC via Nextflow and @seqera.io, with no manual project setup. Result: a many-fold jump in upstream throughput with no extra headcount 📈 hubs.la/Q04z9qQ90 #NextflowSummit

#NextflowSummit Track 6: Genomics at Scale.📈 Follow along for talks from @genomicsengland.bsky.social, @alloxbio.bsky.social, @seqera.io, and Color Health. 📹 Register to join: hubs.la/Q04B5wPd0

hubs.laProcessing genetic data at Our Future Health – Ben Elsworth | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

📊 Genetic data releases scaled 10x (60k to 600k participants) in a year or two. Ben Elsworth shows how @ourfuturehealthuk.bsky.social uses Nextflow to keep releases built on petabyte-scale data reproducible and adaptable as no two releases are the same. hubs.la/Q04zt7fX0 #NextflowSummit

#NextflowSummit Track 6: Genomics at Scale.📈 Follow along for talks from @genomicsengland.bsky.social, @alloxbio.bsky.social, @seqera.io, and Color Health. 📹 Register to join: hubs.la/Q04B5wPd0

hubs.laScaling Pancreatic Cancer Genomics with Nextflow – Jose Espejo Valle-Inclan | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

💪 A 3-person bioinformatics team, a lab that only started in 2025, and 2,000+ pancreatic cancer genomes. Jose Espejo Valle-Inclan shares how @champalimaudf.bsky.social scales with Nextflow, @nf-co.re & @seqera.io: hubs.la/Q04zfZW10 #NextflowSummit

#NextflowSummit Track 8: Pipelines for Everything Else (General Methods)✨ Follow along for talks from @broadinstitute.org, Lonza, UFRN, @unileveruki.bsky.social, @uni-konstanz.de, and @nyupress.bsky.social 📹 Register to join: hubs.la/Q04B5wJS0

hubs.laEnd-to-end Nextflow pipeline for pooled Cell Painting analysis – Erin Weisbart | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

🔬 Erin Weisbart (@broadinstitute.org) presents an end-to-end Nextflow pipeline for pooled Cell Painting, built with @seqera.io. It links 9 image analysis pipelines, with automated QC at each step and gates before the costly final steps. hubs.la/Q04zg59d0 #NextflowSummit

#NextflowSummit Track 6: Genomics at Scale.📈 Follow along for talks from @genomicsengland.bsky.social, @alloxbio.bsky.social, @seqera.io, and Color Health. 📹 Register to join: hubs.la/Q04B5wPd0

hubs.laHow the Anthony Nolan Research Institute uses Nextflow for sequencing analysis – Matthew Gordon | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

🩸 Sequencing run starts Friday, data's ready Monday, no Sunday pipeline launches. Matthew Gordon shows how @anthonynolan.bsky.social automates PacBio HLA analysis with Nextflow, centralized and scaled on @seqera.io, to support better donor-patient matching. hubs.la/Q04zt3Zt0 #NextflowSummit

#NextflowSummit Track 7: AI for Bioinformatics.✨ Follow along for talks from @mit.edu, Altos Labs, Deep Mountain Software, STaiMIC.📹 Register to join: hubs.la/Q04B5wPd0

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hubs.lanf-diffuser - applying Nextflow conventions to generative AI – Sam Ireland | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

✨ Prompts as samples, model weights as reference genomes: Sam Ireland of Deep Mountain Software shows how nf-diffuser applies Nextflow and @nf-co.re conventions to GenAI, running Stable Diffusion as composable modules. hubs.la/Q04zs-Bz0 #NextflowSummit

hubs.laHealthSeq-nf: Learning to Build and Troubleshoot Biomedical Workflows – Oscar Echeverri | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

Wrap-up: Oscar Echeverri of STaiMIC on HealthSeq-nf Learning Lab 🔧 Beginners learn Nextflow by repairing workflows that are computationally broken or scientifically unsuitable, starting with human genomics and building toward multiomics. hubs.la/Q04B5wC80 #NextflowSummit

#NextflowSummit Track 6: Genomics at Scale.📈 Follow along for talks from @genomicsengland.bsky.social, @alloxbio.bsky.social, @seqera.io, and Color Health. 📹 Register to join: hubs.la/Q04B5wPd0

hubs.laScaling Clinical Genomics Pipelines in Nextflow to >100,000 Samples/Year – Aroon Chande | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

🧪 How do you return clinical genetics results to ~50,000 All of Us participants in just four months? Aroon Chande shows how Color Health used Nextflow & @seqera.io to finish early, halve operational costs and cut pipeline failures by 80%. hubs.la/Q04zsSSw0 #NextflowSummit

#NextflowSummit Track 6: Genomics at Scale.📈 Follow along for talks from @genomicsengland.bsky.social, @alloxbio.bsky.social, @seqera.io, and Color Health. 📹 Register to join: hubs.la/Q04B5wPd0

hubs.laWhat's New in MultiQC – Phil Ewels | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

That’s a wrap: What’s New in MultiQC from Phil Ewels 📊 A config wizard for building & validating configs, license tracking, AI-assisted PR reviews, and ECharts in the works for a lighter install & vector PDF exports. @multiqc.info @seqera.io hubs.la/Q04B5tL_0 #NextflowSummit

#NextflowSummit Track 7: AI for Bioinformatics.✨ Follow along for talks from @mit.edu, Altos Labs, Deep Mountain Software, STaiMIC.📹 Register to join: hubs.la/Q04B5wPd0

hubs.laBuilding Reproducible Biological World Models with Nextflow – Vaibhava Lakshmi Ravideshik | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

🔁 Before we trust a simulation of the cell, can we rerun the pipeline that built it and get the same answer twice? Vaibhava Lakshmi Ravideshik (@mit.edu) explores how Nextflow could make biological world models reproducible. hubs.la/Q04zsXtS0 #NextflowSummit

hubs.laAutomation and agentification in bioinformatics pipelines – Dongze He | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

🤖 Automation and agentification: Dongze He shows how Altos Labs automates mass spec analysis on @nf-co.re pipelines from instrument to quant table, and uses an AI agent to build ontology-based sample tables for public data reanalysis. hubs.la/Q04zf_Rp0 #NextflowSummit

#NextflowSummit Track 6: Genomics at Scale.📈 Follow along for talks from @genomicsengland.bsky.social, @alloxbio.bsky.social, @seqera.io, and Color Health. 📹 Register to join: hubs.la/Q04B5wPd0

hubs.laFrom Bottleneck to Benchmark: scaling Bioinformatics at ALLOX using the Seqera Platform/Nextflow – Andrei Papkou | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

That's a wrap from Andrei Papkou of @alloxbio.bsky.social 🚀 Moving to Nextflow & @seqera.io took wet-lab self-serve pipeline runs from zero to 80–90%, cut infrastructure time by 50%+ and slashed GPU costs ~10x using cloud spot instances: hubs.la/Q04z8Yk90 #NextflowSummit

#NextflowSummit Track 6: Genomics at Scale.📈 Follow along for talks from @genomicsengland.bsky.social, @alloxbio.bsky.social, @seqera.io, and Color Health. 📹 Register to join: hubs.la/Q04B5wPd0

hubs.laAdding Depth to 61M New Variants in the Genomics England Research Aggregate – Simon Murray | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

🧬 Simon Murray shared how @genomicsengland.bsky.social added 61M new variants to their research aggregate, powered by Nextflow and @seqera.io Platform: modular design, reproducible, scalable & fast to develop. A new benchmark for genomic healthcare pipelines. hubs.la/Q04z2J_K0 #NextflowSummit

hubs.laKeynote: Hard and Ambitious: How Prima Mente is Building the Capabilities to Uncover Novel Biomarkers and Targets for Neurological Disorders – Hannah Maden | Nextflow Summit 2026Join us at Nextflow Summit 2026 for the latest developments and innovations from the Nextflow world.

That’s a wrap on Hard and Ambitious from Hannah Madan 🧠 @primamente.bsky.social is taking on neurological disorders with 250k+ patient samples, DNA language models, an AI-run autonomous lab in the works, and Nextflow-powered data processing at scale. hubs.la/Q04B5xwH0 #NextflowSummit

Next up, our invited guest Hannah Madan will be giving the keynote talk on how @primamente.bsky.social is building the capabilities to uncover novel biomarkers and targets for neurological disorders. 👀 Tune in to watch: hubs.la/Q04B5wPd0

hubs.laBenchmarking Seqera Intelligent Compute on AWS, Azure and Google Cloud: nf-core Pipeline ResultsWe comparing Intelligent Compute with Azure Batch and Google Cloud Batch across seven nf-core pipelines: rnaseq, sarek, atacseq, chipseq, nanoseq, and viralrecon.

Stop paying for wasted resources.💡Michael Tansini just showed how @seqera.io Intelligent Compute can significantly cut costs, benchmarked on real @nf-co.re pipelines. Now expanded to Azure and GCP!📕 Learn more: hubs.la/Q04B63F40 #NextflowSummit