#NextflowSummit Track 6: Genomics at Scale.π Follow along for talks from @genomicsengland.bsky.social, @alloxbio.bsky.social, @seqera.io, and Color Health. πΉ Register to join: hubs.la/Q04B5wPd0
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#NextflowSummit Track 6: Genomics at Scale.π Follow along for talks from @genomicsengland.bsky.social, @alloxbio.bsky.social, @seqera.io, and Color Health. πΉ Register to join: hubs.la/Q04B5wPd0
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Suleyman Ucuncuoglu from the University of Iowa showed how a single LIMS link launches @nf-co.re/rnaseq on their HPC via Nextflow and @seqera.io, with no manual project setup. Result: a many-fold jump in upstream throughput with no extra headcount π hubs.la/Q04z9qQ90 #NextflowSummit
π Genetic data releases scaled 10x (60k to 600k participants) in a year or two. Ben Elsworth shows how @ourfuturehealthuk.bsky.social uses Nextflow to keep releases built on petabyte-scale data reproducible and adaptable as no two releases are the same. hubs.la/Q04zt7fX0 #NextflowSummit
πͺ A 3-person bioinformatics team, a lab that only started in 2025, and 2,000+ pancreatic cancer genomes. Jose Espejo Valle-Inclan shares how @champalimaudf.bsky.social scales with Nextflow, @nf-co.re & @seqera.io: hubs.la/Q04zfZW10 #NextflowSummit
π©Έ Sequencing run starts Friday, data's ready Monday, no Sunday pipeline launches. Matthew Gordon shows how @anthonynolan.bsky.social automates PacBio HLA analysis with Nextflow, centralized and scaled on @seqera.io, to support better donor-patient matching. hubs.la/Q04zt3Zt0 #NextflowSummit
π§ͺ How do you return clinical genetics results to ~50,000 All of Us participants in just four months? Aroon Chande shows how Color Health used Nextflow & @seqera.io to finish early, halve operational costs and cut pipeline failures by 80%. hubs.la/Q04zsSSw0 #NextflowSummit
Thatβs a wrap: Whatβs New in MultiQC from Phil Ewels π A config wizard for building & validating configs, license tracking, AI-assisted PR reviews, and ECharts in the works for a lighter install & vector PDF exports. @multiqc.info @seqera.io hubs.la/Q04B5tL_0 #NextflowSummit
That's a wrap from Andrei Papkou of @alloxbio.bsky.social π Moving to Nextflow & @seqera.io took wet-lab self-serve pipeline runs from zero to 80β90%, cut infrastructure time by 50%+ and slashed GPU costs ~10x using cloud spot instances: hubs.la/Q04z8Yk90 #NextflowSummit
𧬠Simon Murray shared how @genomicsengland.bsky.social added 61M new variants to their research aggregate, powered by Nextflow and @seqera.io Platform: modular design, reproducible, scalable & fast to develop. A new benchmark for genomic healthcare pipelines. hubs.la/Q04z2J_K0 #NextflowSummit