Pinned
Steve Haddock
Steve Haddock
@stevehaddock.bsky.social
Marine biology, ctenophores, bioluminescence, deep-sea, genomics, computing for biologists. The Radiant Sea. Photo book. Cello? Views my own. bit.ly/arms-deep bit.ly/radsea
2K followers283 following265 posts
Steve Haddock reposted
Our new paper in PLoS One on siphonophore genomes, with chromosome-scale genome for Nanomia septata! Led by @nahuja.bsky.social with @dalila-de.bsky.social, @shchurch.bsky.social, @dts.bsky.social and others. doi.org/10.1371/jour...
Claude has updated our sequence deduplication script, and you can download binaries here: github.com/beroe/seqded... This script removes identical sequences from DNA or protein files. For DNA it also checks reverse complements. For protein, it can remove identical sub-strings. Runs multithreaded. 🧪
Steve Haddock reposted
Obsoleting my previous post..! Custom sequence logo generation for proteins is now avaiable through a browser interface, with a dark theme option for your conference presentations. 🧪 beroe.github.io/sequence-log...
I have never liked the style of these protein sequence logos, so I subdued the colors and had Claude make a custom version that can use any typeface. Small details: it does not fatten sans serif 'I' characters and puts a tiny gap between letters. All user configurable. 🧪 github.com/beroe/sequen...
If you’re known by the company you keep, I’m in good shape with this article about ctenophores. Great to be paired up with these luminaries, including @ibudin.bsky.social 🦑🌊🧪
Lovely to see several pieces of our ctenophore work featured in this beautiful new story from @quantamagazine.org 🪼 Great piece by @mstarling.bsky.social, also featuring work by @stevehaddock.bsky.social, @arnausebe.bsky.social & @hejnol.bsky.social. www.quantamagazine.org/ctenophores-...
One year ago, The Radiant Sea appeared in print! Still super happy with how it turned out. Our mission to share a different view of ocean life seems to have succeeded.💙 Named a top ten photography book of 2025 by @smithsonianmag.bsky.social, and many anecdotes from people who appreciated it. 🙏 🌊🧪🦑
Our science photo book The Radiant Sea is out Sept 2nd!! 30 years of research, 10 years of "we should", and a year of collating pix and writing. Sönke and I show (mostly for the first time) images of how organisms produce, use, and interact with light in the sea. #bioluminescence #fluorescence 🦑🧪🌊
Steve Haddock reposted
Attending the 2026 Western Society of Naturalists Meeeting in Sacramento? Consider submitting an abstract to our session on the use of autonomous systems & machine learning in marine science. Research & education talks welcomed. Abstracts due September 9th. www.wsn-online.org/annual-meeti...
5800+ chromosome-scale genomes? ✅ Eye-popping visualizations? ✅ Spanning the entirety of animal evolution? ✅ The latest from Prof. Darrin Schultz and company 🧪
Our new paper in Science Advances asks how animals' genomes have changed since their origin from a common ancestor over 600 million years ago, and what patterns in their DNA have arisen in the churn of speciation and extinction. www.science.org/doi/10.1126/...
Steve Haddock reposted
my first 'data descriptor'! hoping this one will be useful for folks interested in tracing the distribution of genomes/genes/proteins over physicochemical gradients in the (deep) marine water column.
Deeply-sequenced metagenomes and over 1000 draft genomes from the epipelagic to bathypelagic Northeast Pacific Ocean https://www.biorxiv.org/content/10.64898/2026.07.18.739368v1
Attention fans of #ctenophores 🌊🦑🧪 Please consider joining us at the Ctenopalooza Ctwo conference/celebration in California this August. Support is potentially available for artists and communicators. www.mbari.org/event/ctenop... Register soon or miss out on the fun! Meals included!
Steve Haddock reposted
Steve Haddock reposted
I am hiring a postdoc for scRNA-seq research in Lund, Sweden on the visual systems of non-model inverts as part of an ERC project on the evolution and ecology of advanced color and polarization vision. Apply here or share the link with someone who may be interested! 🧪 lu.varbi.com/en/what:job/...
Just when you thought one couldn't revolutionize typography, Riley and the Lettermatic team blow your mind! Nearly 750,000 glyphs! But my favorite is Texture Healing. Check it out!
New work for GitHub: Monaspace. 🔤 A superfamily of 5 open-source typefaces for code. Full case study here: lettermatic.com/custom/monas...
Steve Haddock reposted
New work for GitHub: Monaspace. 🔤 A superfamily of 5 open-source typefaces for code. Full case study here: lettermatic.com/custom/monas...
Steve Haddock reposted
(3/10) The Golden Glow Zoantharian is the first documented deep-sea cave species to bioluminesce. www.marinespecies.org/worms-top-te... #toptenmarinespecies #taxonomistappreciationday #OceanDecade #GenOcean
Steve Haddock reposted
The ocean and all who love it lost an inspiring advocate with the passing this week of Tierney Thys. She brought such joy to the work of protecting and restoring our blue planet. This wonderful tribute from Danielle Thys captures her spirit so beautifully: bit.ly/4s4hVq6
Steve Haddock reposted
When you zoom out from individual genes to consider the context of whole chromosomes across animal diversity, animal evolution takes on a different look. Oleg Simakov and I published a review in @annualreviews.bsky.social on topological approaches in comparative genomics. 🧬 doi.org/10.1146/annu...
San Francisco-area fans of ocean animals and flashy colors. 🦑🌊🧪 I'll be giving a presentation about our book The Radiant Sea at 1 pm on Saturday Feb 28 at the Book Passage shop in Corte Madera. (Preposition overload!) Swing by and say Hi. www.bookpassage.com/event/steven...
Our science photo book The Radiant Sea is out Sept 2nd!! 30 years of research, 10 years of "we should", and a year of collating pix and writing. Sönke and I show (mostly for the first time) images of how organisms produce, use, and interact with light in the sea. #bioluminescence #fluorescence 🦑🧪🌊
Steve Haddock reposted
From our new paper out now in @currentbiology.bsky.social: www.cell.com/current-biol... w/ @neurofishh.bsky.social @gkafetzis.bsky.social @denilsson.bsky.social Looking across animals, the vertebrate eye is an obvious outlier. Why is it so different that other highly visual animals?
Steve Haddock reposted
🧪📍🌊 🦑🍎 We’re excited to announce that we are organizing a second ctenophore meeting — Ctenopalooza Ctwo — to be held at the Monterey Bay Aquarium Research Institute (MBARI) in Monterey Bay, California, on August 23–25, 2026. Registration is now open! www.mbari.org/event/ctenop...
Calling all #ctenophore researchers and artists! Joe Ryan is organizing the Ctenopalooza Ctwo meeting, which we will host at MBARI in California August 23-25. 🦑🧪🌊 www.mbari.org/event/ctenop... Come swap notes with fellow enthusiasts about the latest news in comb jellies.
Steve Haddock reposted
Under cover of darkness, it's a race to eat before being eaten! Attention #teachers #librarians #ocean lovers! Win a copy of THE OCEAN'S HEART, illus. by Khoa Le! Releasing March 3! 📚👍 kathytemean.wordpress.com/2026/02/17/b... #kidlit #picturebook @pbspree.bsky.social @lernerbooks.bsky.social
Related to high pressure, @ibudin.bsky.social and Jacob Winnikoff led a study which showed that a particular lipid headgroup (PPE) is more abundant in membranes of deep #ctenophores. 🧪🦑 What was amazing was when they put PPE into bacterial membranes, the bacteria became more pressure tolerant!
Some deep-sea facts for you! High pressure changes protein folding, requiring specialized enzymes to function at depth. Deep-sea life isn’t just tougher. It runs on proteins that often stop working at surface pressure. europepmc.org/article/med/...
The re-analysis of this #sponge #ctenophore study made me realize how important it is to really *look* at your data. Their filtering pipeline was meant to retain "strong" genes, but many of them had NO ctenophores and most had polyphyletic sponges. Time to put down the pitchforks for a while.
Our eLetter github.com/caseywdunn/s... responding to a recent Science paper was just posted. The paper found more genes with consistent support for sponge-sister than ctenophore-sister. We found several technical issues that, when corrected, reverse the conclusions and recover ctenophore-sister.
Steve Haddock reposted
Steve Haddock reposted
Thrilled to see our review article "The evolutionary origins of synaptic proteins" highlighted on the cover of Nature Reviews Neuroscience 🤩. www.nature.com/articles/s41... @msarscentre.bsky.social 🧠✨🧬🌊🪼🧽
First neurons didn’t appear overnight. We trace their roots to ancient secretory cells - showing how lifestyle & behavior shaped the evolution of first synapses.🧠🌊 #Evolution #Neuroscience Our latest in @natrevneuro.nature.com Link: rdcu.be/eMX3E @jeffcolgren.bsky.social @msarscentre.bsky.social
Steve Haddock reposted
This could be your dream job: working full time at the Friday Harbor Labs on marine invertebrate organismal biology. Nine month salary from an endowment, teaching and research faculty position. apply.interfolio.com/178804
Not to mention… we just had our 4th ever sighting of Haliphron in over 35 years (7000+ ROV dives). Its arms were closed up but we followed it until we could see that it was again holding a jellyfish… m.youtube.com/watch?v=4_lt... See also: www.nature.com/articles/sre...
One of the least-appreciated giant cephalopods, Haliphron atlanticus, is in the news! (thx @scsmith4.bsky.social for the heads up) Unfortunately the common name seven-arm octopus - only describes males - actually doesn't even describe males Can we think of a better one?? www.bbc.com/news/article...
Steve Haddock reposted
First neurons didn’t appear overnight. We trace their roots to ancient secretory cells - showing how lifestyle & behavior shaped the evolution of first synapses.🧠🌊 #Evolution #Neuroscience Our latest in @natrevneuro.nature.com Link: rdcu.be/eMX3E @jeffcolgren.bsky.social @msarscentre.bsky.social
Apologies that I'm going to be all about THE RADIANT SEA for the foreseeable future, but .... 😉 Our book has been released in the U.K. now and should be available at your local bookshops! 🦑🧪 (with @sonkejo.bsky.social)
Thanks to those of you brave enough to vote. :^) Still time to sway the results with your own thoughts on #ctenophore anatomy. 🦑🧪
For CTENOPHORE DAY, a little survey: Which end of this fishing Pleurobrachia is the mouth on? Please just "vote" in the comments — no definitive answers. 🦑🧪🌊 P.S. this is one of my earliest #ctenophore photos, shot on film in a home-built kreisel. P.P.S. Legit data-gathering for a future paper.
Not to hijack this thread, but our book The Radiant Sea includes 35 pages of fluorescent animals (and humans.. and asparagus). Here is a young strawberry squid showing green fluorescence in the eyes and red fluorescent caps on its photophores. 🦑🧪🌊
Fluorescent cycling jackets have dyes that absorb invisible ultraviolet (UV) light and re-emit visible light. This UV can pass through clouds & there's lots on a dull day. So the jacket gets a brightness boost. This is also what "optical brighteners" in laundry powder do (see pic). Also scorpions!
@sonkejo.bsky.social and I were interviewed by @mdlaplante.bsky.social for his UnDisciplined podcast www.upr.org/podcasts/103... I don’t like hearing myself speak so I haven’t listened back, but my mom “LOVED IT”, so that counts for something. 😉 Support public radio, Utah PR, and @npr.org 🦑🧪🌊
Our science photo book The Radiant Sea is out Sept 2nd!! 30 years of research, 10 years of "we should", and a year of collating pix and writing. Sönke and I show (mostly for the first time) images of how organisms produce, use, and interact with light in the sea. #bioluminescence #fluorescence 🦑🧪🌊
It is great to see Mackenzie Gerringer's taxonomic work, describing a fish we collected from 3800 meters, featured in the @nytimes.com. We tried to spin this story to combat the blobfish's "ugliest creature" reputation, to get people excited by deep-sea exploration, not turned away. 🧪🦑
The bumpy snailfish, discovered 10,000 feet down off the coast of California, shows that not all denizens of the abyss are frightening. (I watched the video more than 10 times.) My latest for @nytimes.com (gift link!) #marinelife www.nytimes.com/2025/09/08/s...
Thanks to your incredible support, THE RADIANT SEA is already the top-selling new release in... Entomology? There are going to be some disappointed bug-huggers out there (looking at you @franzanth.bsky.social). 😉 I am hopeful they will warm up to pictures of ocean bugs like Cystisoma.
Our science photo book The Radiant Sea is out Sept 2nd!! 30 years of research, 10 years of "we should", and a year of collating pix and writing. Sönke and I show (mostly for the first time) images of how organisms produce, use, and interact with light in the sea. #bioluminescence #fluorescence 🦑🧪🌊