We not only publish data to @gbif.org, we also build upon it as an infrastructure, from early alert tools to sensor-based data portals. ๐โโ๏ธ Team members @sannegovaert.bsky.social & @lienrey.bsky.social presented our work at the GBIF Belgium 25th Anniversary event in Brussels www.biodiversity.be/6492/
Open science lab for biodiversity
Open science lab for biodiversity
@oscibio.inbo.be
We make biodiversity research open & reproducible through data, standards and software. Based at @inbo.be in Belgium. https://oscibio.inbo.be
121 followers45 following9 posts
Open science lab for biodiversity reposted
At #TDWG2026, I presented how the #radar aeroecology has built standards, infrastructure & tools for biomass flow data captured by weather radars. Can we evolve to a digital twin of the aerial habitat? ๐ speakerdeck.com/peterdesmet/... @tdwg.org @gbif.org @cnilsson.science @biodiversa.eu
Open science lab for biodiversity reposted
โญ Celebrating 25 years of GBIF! โญ To mark GBIFโs 25th anniversary, a new open access article in the Biodiversity Data Journal provides a comprehensive overview of GBIFโs history, network and infrastructure. ๐ Read the article:๐https://gbif.link/gbif25paper-news @bdj.pensoft.net @pensoft.net
๐ฆ We just released a new version (1.0.0) of our R package {camtraptor}, which you can use to explore & visualize camera trap datasets. ๐ธ๐ฆ This long-awaited release supports Camtrap DP v1.0 and offers a step-by-step exploration workflow with new functions. #rstats ๐ oscibio.inbo.be/blog/camtrap...
๐ฆ We just released a new version (1.3.0) of our R package {frictionless}, which you can use to create FAIR datasets. It includes improvements for users who want to stick with Data Package v1, since the next version (2.0.0) will adopt Data Package v2. #rstats ๐ oscibio.inbo.be/blog/frictio...
Open science lab for biodiversity reposted
Looking forward to #BioMonWeek 2026 with the @inbo.be team: @peterdesmet.com: โDT07 Standardising and sharing survey and monitoring data through GBIF and OBISโ, Also present: Stijn Van Onsem, Ward Langeraert Poster session: Veronique Adriaenssens, @tmilotic.bsky.social.
๐ฆ We just released a new major version (3.0.0) of our R package {etn}. Use it to query animal tracking data from the @aquatictracking.bsky.social database. โ๏ธโ๐ฅ Previous versions were restricted to use on an RStudio server. You can now use {etn} from anywhere! #rstats ๐ oscibio.inbo.be/blog/etn-3-0-0
Open science lab for biodiversity reposted
We invite you to submit an abstract for a session on animal movement, behaviour and biologging at the 7th World Conference on Marine Biodiversity in Bruges, Belgium (17-20 November 2026) @wcmb2026.bsky.social, @inbo.be, @vliz.be, @aquatictracking.bsky.social More info below! ๐
Open science lab for biodiversity reposted
Have (tabular) datasets to describe? Or standards to maintain? Data Package can help! ๐ I presented an introduction to this generic, simple, open and extensible standard at #LivingData2025. speakerdeck.com/peterdesmet/... @okfn.bsky.social @tdwg.org @gbif.org @obis.org @geobon.org
Open science lab for biodiversity reposted
Yesterday, @peterdesmet.com shared plans to publish 1000 bio-logging datasets to @gbif.org&@obis.org and spoke about ๐งญBest practices for transforming bio-logging data ๐งฐOpen-source tools supporting this ๐How GBIF & OBIS data can be used for visualisations with B-Cubed occurrence cubes #LivingData2025
Open science lab for biodiversity reposted
"The INBO Coding Club story" - Serving a sustainable coding community Exploring community engagement and capacity building at #LivingData2025 in Bogotรก ๐จ๐ด ๐Abstract bit.ly/4hpN3vz ๐Slides bit.ly/47l4FUZ @inbo.be and @oscibio.inbo.be โค๏ธ #OpenScience #Rstats
Open science lab for biodiversity reposted
๐จHave your say on the new conceptual model and Data Package Guide for #DarwinCore The @tdwg.org Darwin Core Maintenance Group has opened a 90-day public review and comment period for the new conceptual model and Data Package Guide. ๐๏ธ 17 September โ 16 December 2025 ๐ www.tdwg.org/news/20...
๐ฆ We just released a new version (0.4.0) of our R package movepub. ๐ This release improves the conversion of animal tracking data to Darwin Core and EML, making it easier to publish this type of data to @gbif.org and @obis.org. ๐ oscibio.inbo.be/blog/movepub... #rstats #biologging
๐ฆ We just released a new version (0.4.0) of our R package camtrapdp. ๐ This release includes lots of new functionality, such as merging and writing Camera Trap Data Packages, updating taxa or rounding coordinates, and conversion to EML. ๐ oscibio.inbo.be/blog/camtrap... #rstats #cameratrapping
Open science lab for biodiversity reposted
๐ The #FrictionlessSummit documentation is live. Review how the community meeting went to discuss #TheTechWeWant vision and the next steps for #FrictionlessData. โ๏ธ Blog by Community Manager @sarapetti.bsky.social : buff.ly/aQieIwO โถ๏ธ Video recording: buff.ly/8iZ2kNv
Open science lab for biodiversity reposted
We're working on a common standard for Passive Acoustic Monitoring (PAM) data! ๐ก๐๏ธ Hopefully this will boost data sharing, FAIR access & large-scale studies. ๐งช Read about our proposed standard & join our May webinar via @wildlabs.bsky.social More: wildlabs.net/discussion/s...
Open science lab for biodiversity reposted
Great work by @elhamebrahimi.bsky.social at #ecm9 on creating reports starting from the #cameratrap DP standard. First of many outcomes coming out of #Big_Picture, a @biodiversaplus.bsky.social consortium focused on improving the camera trap pipeline ๐ท๐ฆ๐บ๐ซ๐ท
@elhamebrahimi.bsky.social presenting really important and cool work on a new R package to automate reporting of camera trap data at #ecm9 Work that is done as part of our Biodiversa+ project #Big_Picture
Open science lab for biodiversity reposted
๐ซ Happening now: @peterdesmet.com shows a concrete application of #DataPackage in the Camtrap DP project buff.ly/5EmL55P to observe animals in wildlife in a non-intrusive way. ๐๐พ You can still join the #FrictionlessSummit: buff.ly/6JSOeeQ #TheTechWeWant #OpenData
Open science lab for biodiversity reposted
๐ฅ Better than the original: New SQL-based service enables download of occurrence data cube GBIF has enabled an easy-to-use service for creating and downloading species occurrence cubes based on GBIF-mediated data. Collaborators: @b-cubed.eu led by @inbo.be gbif.link/data-cubes
Open science lab for biodiversity reposted
We're looking for the input of IAS data collectors, users or curators to take part in a survey to help shape the future of IAS data standards and accessibility. This survey is hosted by the GBIF and @tdwg.org task groups on IAS โญ ๐www.surveymonkey.com...
Open science lab for biodiversity reposted
Replying to @b-cubed.eu
๐ฆ B-Cubed developed a collection of R packages to calculate biodiversity indicators from occurrence cubes Access the b3verse ๐ docs.b-cubed.eu/guides/b3ver... #BCubed2025
Open science lab for biodiversity reposted
๐ ะขhe #BCubed2025 meeting just kicked off in Leipzig๐ฉ๐ช ๐ป We start with a demo of our upcoming @gbif.org service to create species occurrence cubes More details on that very soon๐
Open science lab for biodiversity reposted
๐๐พ Next week we'll be discussing the future of #FrictionlessData from the perspective of #TheTechWeWant initiative โ @okfn.bsky.social's ambitious effort to reimagine how technology is built and used. ๐๐พ Check the programme and register now: buff.ly/BqZQgyF #DataPackage #OpenData
Open science lab for biodiversity reposted
TRAVEL GRANTS FOR EARLY CAREER RESEARCHERS AVAILABLE!! ๐๐ Members of ETN who are early in their career can now apply for travel grants of 500 Euros to attend ICFT 2025 (Traverse City, Michigan, USA) ๐ When: until 15 April Decision: by 30 April docs.google.com/forms/d/e/1F... #trackingnotslacking
Open science lab for biodiversity reposted
Curious about making static dashboards in R? ๐ถ Check the Feb edition of the INBO coding club. ๐ Slides: bit.ly/3XALIcM ๐ฝ๏ธ Video: bit.ly/3DjXem6 Missed our previous adventuRes? Catch up on all our sessions: bit.ly/3X4pWNA We @oscibio.inbo.be and @inbo.be โค๏ธ #OpenScience, #RStats
Open science lab for biodiversity reposted
We're looking for the input of IAS data collectors, users or curators to take part in a survey to help shape the future of IAS data standards and accessibility. This survey is hosted by the GBIF and @tdwg.org task groups on IAS โญ ๐www.surveymonkey.com...
Open science lab for biodiversity reposted
Weather radars continuously register the movements of billions of animals in the air! We have now published datasets covering large parts of Europe, providing an overview of the aerial habitat in a way no other method can. Data is available on Alofdata.eu , see our blogpost: go.nature.com/3F0wQ0L
Open science lab for biodiversity reposted
๐ Tomorrow, B-Cubed is celebrating 2๏ธโฃ years of advancing biodiversity data integration! ๐ From launching various data packages to hosting hackathons and shaping policy discussions at events, progress toward accessible and actionable data is clear Visit b-cubed.eu and stay tuned for more updates! ๐
Open science lab for biodiversity reposted
๐๏ธ Only two days left before #GuardiasOnestopKickoff meeting in Ispra, Italy! ๐คฉ ๐ This joint event will create a collaborative space for future work in the area of #InvasiveSpecies across terrestrial and marine environments. ๐บ๏ธ
๐ฅ Excitement builds as we gear up for the #GuardiasOnestopKickoff meeting on 20-23 Jan at the #JRC in Ispra, Italy! ๐ค ๐ Together with @guardias.bsky.social, we aim for lasting collaboration to tackle #InvasiveSpecies across land & sea. ๐บ๏ธ ๐ฃ Follow us for updates on #GuardiasOnestopProjects ๐
We create #opensource code, but what is its impact? Luckily, Raphaรซl Nussbaumer wrote a blog post describing how he used our software to build a data standard for #geolocator data: oscibio.inbo.be/blog/geoloca... Couldn't be more proud! ๐ฅน
Open science lab for biodiversity reposted
Onze @peterdesmet.bsky.social schreef mee aan artikel in @natureecoevo.bsky.social dat pleit voor standaardisatie en archivering van biologging-data. Met @oscibio.bsky.social is het @inbo.bsky.social hier pioneer in: onze data voor vogels en vissen zijn publiek beschikbaar. rdcu.be/d5ptG
Open science lab for biodiversity reposted
New Perspective: Establishing bio-logging data collections as dynamic archives of animal life on Earth rdcu.be/d5ril Davidson et al discuss the importance of standardization, long-term archiving and sharing of bio-logging data, and outline a roadmap to achieve these goals.
Open science lab for biodiversity reposted
Let's go to @fosdem.bsky.social 2025 ๐ Our proposed abstract about the INBO coding club has been accepted: bit.ly/3ZzsDYI ๐ @fosdemresearch.bsky.social for organizing a specific room about Open Research๐ช We at INBO and @oscibio.bsky.social ๐ #OpenSource #RStats
We just published a new dataset to @gbif.org: doi.org/10.15468/gn8... ๐ธ๐ฆโจ It contains camera trap observations of roedeer ๐ฆ, Chinese muntjac ๐ฆ, dogs ๐, foxes ๐ฆ and many other species and is the first dataset of @inbo.bsky.social in the Camtrap DP format.
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