Rick Byers Lab

Rick Byers Lab

@lab.rbyers.ca

I am a citizen scientist and a molecular biology enthusiast. https://lab.rbyers.ca

41 followers12 following50 posts

Four years ago I missed my favourite conference ("BlinkOn") for a bad cold. It's been the biggest frustration of my lab that I couldn't find the virus that caused it. Now, that I have a 32-way panel from YouSeq.com I finally know why: It was a bacteria, H.Influenzea, not a virus at all!

Perhaps if I had had this test at the time, I could have taken some antibiotics right at the start and not needed to miss the conference, and not felt lousy for 12 days! I don't understand why more people aren't curious to actually understand what organism has infected them!

Instead of spending $2,000 for windows-only software for my new (used) Bio-Rad C1000/CFX96 thermocycler, I have spent the last couple weeks with Claude reverse engineering formats and protocols and building a web app! Check it out: zpcr.rbyers.ca. I'm learning SO much about how qPCR works this way!

I'm trying to adopt agentic engineering practices in my lab work (eg. putting claude code in charge). I was worried it would screw up my pristine data but instead it's really pissing me off by identifying tons of mistakes I've made in my notes over the years!

I finally bought a serious lab qPCR machine: Bio-Rad CFX96 Touch (96 well, 5 channels), compared to my Biomeme Franklin (9 well, 3 channels). Already I can tell I'll be able to do so much more with it!

Instead (or at least ahead) of spending $2,000 on the CFX Manager software BioRad sells, I had Claude reverse engineer the proprietary results file format and generate a script for converting the amplification curves to CSV format in less than 15 minutes! That's good enough for day 1.

I'm working on a blog post for low-cost DIY SARS-CoV-2 PCR testing using a cheap miniPCR and manual fluorescence visualization. Is this visualization of positives vs. negatives clear enough?

I forgot that my NEB Luna MM comes with a ROX-like reference dye, so there's an orange background glow in all tubes. It doesn't seem to inhibit detection in the amber channel on my Biomeme qPCR, but it's sure annoying when looking visually like this.

I appreciate that I am privileged in that I live in a country, Canada, where I trust my government to protect me from genetic discrimination and surveillance. But we should all demand this freedom from our governments.

I mean we're all spewing our DNA out into the air and surfaces we touch all day, every day. It's getting increasingly untenable to think of keeping this information secret unless you want to live the rest of your life in a bubble!

If anyone has a source for good lab-quality denatured ethanol that will work with spin column extraction, let me know. I know "real" labs use pure ethanol, but it's heavily regulated. The BioBasic 15% methanol has always worked fine with their EZ-10 kits for me, but I don't see it on their site now.

Three RSV RATs I did at the same time: 1. A shallow (but thorough) nasal swab, fully negative 2/3. Deep mid-turbinate nasal swabs, clearly positive. I'm surprised by the difference. In my PCR tests of other viruses I've seen very little difference from swab depth.

Did another Europe cruise with my family, came home harbouring another new virus for my collection. That's three for three: Dec 2023 in the Caribbean: Influenza A July 2024 on the Danube: Parainfluenza 3 Mar 2026 on the Rhine: Respiratory syncytial virus A Perhaps I should be learning something?

I sequenced my remaining 3 SARS-CoV-2 samples: - Feb 2025 I had JN.1.4.3.1 - Aug 2025 my son had PQ.24 - Feb 2026 my daughter had PQ.2.8.1 I now have 7 SARS-CoV-2 sequences from my family, nextclade puts them on the phylogenetic tree this way:

PQ is a recombinant variant which includes a spike gene derived from JN.1, which is what the Fall 2025 mRNA vaccines targeted. So my daughter should have had some good protection and indeed her illness was very mild (was shocked to learn it was COVID). The JN.1 shot came too late for me and my son.

My teenage daughter just tested positive for COVID. I'm taking care of her this weekend. It's been two years since I've had COVID and 4 months since my last booster. Will I be able to keep from getting infected?

Thankfully we avoided catching it from her, and so we went on vacation as planned. N95 masks, UV-C HVAC sterilization and iota carrageenan nasal spray for the win!

I can’t fathom how it took me years to discover this safe and likely effective defence for and treatment of all respiratory viruses! It seems there’s a serious disconnect between academic science and public health. Why hasn’t this been studied and promoted a LOT more?

SiPhox (siphoxhealth.com) is pretty awesome. I've been doing monthly blood tests for a variety of biomarkers without the hassle of going to get a blood draw. It makes it so much easier to stay on top of things like cholesterol and blood sugar, and really learn how to move them.

siphoxhealth.comAt-Home Blood Tests | Comprehensive Health Testing & Biomarker Analysis | SiPhox HealthSiPhox Health brings comprehensive, at-home blood testing to your door! Take control of your disease risk and increase your healthspan today with affordable, convenient at-home blood testing. No lab v...

Also turns out I probably had a zinc deficiency leading to low testosterone. After years of working with my doctor to troubleshoot fatigue, I think I may have found and fixed at least part of the issue myself thanks to SiPhox.

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